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* #include an absolute path didn't work - because paths were taken to always be relative.
* WIP extracting source documentation.
* WIP doc extraction.
* More stuff around doc markup extraction.
* More WIP around doc extraction.
* Fix some indexing issues.
* Initial doc extraction working.
* Renaming of types in markup extraction process.
* Extracting markup content.
Removing indenting.
Other fixes and improvements around document tools.
* WIP support for documentation system.
* Remove some commented out sections.
* Remove some comments that no longer apply.
* Improvements around SourceFile - such that more granularity around line ops.
Made some functionality explicitly work without source.
Improved Doc types nameing.
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